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HOME / About / Staff Members / Hongzhan Huang
Hongzhan Huang, Ph.D.
Team Lead, Bioinformatics and Research Assistant Professor
Protein Information Resource
hh42@georgetown.edu
Primary Expertise
Dr. Huang is experienced in bioinformatics and statistical genetics. He is Bioinformatics Team Lead at PIR. He specializes in genomic data analysis, protein database development and computer programming.

Education
B.S.., Mathematics, Zhongshan University,Guangzhou, China, 1980
Graduate, Mathematics, South China Inst. of Technology, Guangzhou, China, 1986
M.S., Genetics,University of California, Davis , CA. 1992
Ph.D., Genetics, University of California, Davis , CA. 1993

Publications
Wu, C.H., Apweiler, R., Bairoch, A., Natale, D.A., Barker, W.C., Boeckmann, B., Ferro, S., Gasteiger, E., Huang, H., Lopez, R., Magrane, M., Martin, M.J., Mazumder, R., O'donovan, C., Redaschi, N., Suzek, B. (2006). The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Research, 34, D187-91.

Bairoch, A., Apweiler, R., Wu, C. H., Barker, W. C., Boeckmann, B., Ferro, S., Gasteiger, E., Huang, H., Lopez, R., Magrane, M., Martin, M.J., Natale, D.A., O'Donovan, C., Redaschi, N., Yeh, L.S. (2005). The Universal Protein Resource (UniProt). Nucleic Acids Research, 33: D154-159.

Wu, C.H., Huang, H., Nikolskaya, A., Hu, Z. and Barker, W.C. (2004). The iProClass integrated database for protein functional analysis. Computational Biology and Chemistry, 28, 87-96.

Li, W., Amri, H., Huang, H., Wu, C.H. and Papadopoulos, V. Gene and protein profiling of the acute response of MA-10 Leydig tumor cells to human chorionic gonadotropin. Journal of Andrology, 2004 25:900-13.

Huang, H., Hu, Z. Z., Suzek, B. E. and Wu, C. H. (2004) The PIR integrated protein databases and data retrieval system. Data Sci J 3:163-174.

Wu, C. H., Nikolskaya, A., Huang, H., Yeh, L.-S., Natale, D., Vinayaka, C. R., Hu, Z., Mazumder, R., Kumar, S., Kourtesis, P., Ledley, R. S., Suzek, B. E., Arminski, L., Chen, Y., Zhang, J., Cardenas, J. L., Chung, S., Castro-Alvear, J., Dinkov, G. and Barker, W. C.(2004). PIRSF family classification system at the Protein Information Resource. Nucleic Acids Research, 32, D112-114.

Apweiler R, Bairoch A, Wu, C. H., Barker, W. C., Boeckmann, B., Ferro1, S., Gasteiger, E., Huang, H., Lopez, R., Magrane, M., Martin, M. J., Natale, D. A., O Donovan, C., Redaschi, N., Yeh, L. S. (2004). UniProt: Universal Protein Knowledgebase. Nucleic Acids Research, 32, D115-119.

Wu, C. H., Yeh, L.-S., Huang, H., Arminski, L., Castro-Alvear, J., Chen, Y., Hu, Z., Kourtesis, P., Ledley, R. S., Suzek, B.E., Vinayaka, C.R., Zhang, J. and Barker, W. C. (2003). The Protein Information Resource. Nucleic Acids Research, 31, 345-347.

Huang, H., Barker, W. C., Chen, Y. and Wu, C. H.(2003). iProClass: An Integrated Database of Protein Family, Function, and Structure Information. Nucleic Acids Research, 31, 390-392.

Wu, C. H., Huang, H., Yeh, L.-S. and Barker, W. C. (2003). Protein family classification and functional annotation. Computational Biology and Chemistry, 27, 37-47.

Wu, C.H., Huang, H., Arminski, L., Castro-Alvear, J., Chen, Y., Hu,Z. Z., Ledley, R. S., Lewis, K. C., Mewes, H., Orcutt, B. C., Suzek, B. E., Tsugita, A., Vinayaka, C. R., Yeh, L. S., Zhang, J., Barker, W. C.(2002). The Protein Information Resource: an integrated public resource of functional annotation of proteins . Nucleic Acids Research, 30, 35-37.

Wu, C.H. , Xiao, C., Hou, Z., Huang, H., and Barker, W. C. (2001). iProClass: An integrated and comprehensive protein classification database. Nucleic Acids Research, 29, 52-54.

Barker, W. C., Huang, H., et al., (2001). The Protein Information Resource. Nucleic Acids Research, 29, 29-32.

Huang, H., Xiao, C. and C. H. Wu. (2000). ProClass protein family database. Nucleic Acids Research, 28, 273-276.

Barker, W. C., et al. and C. H. Wu. (2000). The Protein Information Resource. Nucleic Acids Research, 28, 41-44.

McGarvey, P., Huang, H., Barker, W. C., Orcutt, B. C. and Wu. (2000). PIR Web site: New resource for bioinformatics. Bioinformatics, 16, 290-291.

Wu, C. H., H. Huang and J. McLarty. (1999). Gene family identification network design for protein sequence analysis. International Journal of Artificial Intelligence Tools, Special Issue on Biocomputing, 8 (4), 419-432.

C.Wu, S. Shivakumar and H. Huang, (1999) ProClass protein family database, Nucleic Acids Research, 27:272-274.

H. Huang and J. Harding, (1998) Quantitative analysis of correlations among flower traits in gerbera, Theor. Appl. Genet., 97:312-322.

C. Wu and H. Huang, (1998) Gene family identification using neural networks, Proceedings of the World Multiconference on Systemics, Cybernetics and Informatics (SCI'98).

J. Harding, H. Huang, and T. Byrne (1996) Estimation of genetic variance components and heritabilities for cut-flower yield in gerbera using least squares and maximum likelihood methods, Euphytica 88: 55-60.

H. Huang, J. Harding, T. Byrne and T. Famula (1995) The effects of inbreeding on cut-flower yield in gerbera, Euphytica 81: 157-161.


Revised 01/09/06

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